FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005715229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005715229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences216065
Sequences flagged as poor quality0
Sequence length10-61
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTT4280.19808853817138364No Hit
TTTTTTTTTTT4180.19346030129822045No Hit
TTTTTTTTTTTT3950.18281535648994515No Hit
TTTTTTTTTTTTTT3800.1758730011802004No Hit
TTTTTTTTTTTTTTT3430.1587485247494967No Hit
TTTTTTTTTT2990.13838428250757873No Hit
TTTTTTTTTTTTTTTT2820.13051627982320135No Hit
TTTTTTTTTTTTTTTTT2560.11848286395297711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)