FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005715243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005715243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences706499
Sequences flagged as poor quality0
Sequence length10-85
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGGCCTGTTACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACT41260.5840064883319014Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GGATGGCCTGTTAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGA20270.2869076955522938TruSeq Adapter, Index 2 (97% over 36bp)
GGATGGCCTGTTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGAC16660.23581066639867856TruSeq Adapter, Index 4 (100% over 37bp)
GGATGGCCTGTTACCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC12380.17523025510297963Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GGATGGCCTGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCA9180.12993648964825144TruSeq Adapter, Index 4 (100% over 39bp)
GGATGGCCTGTTACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTG9150.12951186059711337TruSeq Adapter, Index 2 (97% over 35bp)
GGATGGCCTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAA8480.12002847845502965TruSeq Adapter, Index 4 (100% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)