FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005716045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005716045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205420
Sequences flagged as poor quality0
Sequence length10-85
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAA2820.1372797195988706No Hit
AAAAAAAAAAAAA2470.1202414565280888No Hit
AAAAAAAAAAAAAA2440.11878103397916463No Hit
AAAAAAAAAAA2300.11196572875085192No Hit
AAAAAAAAAA2070.10076915587576674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)