FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005716269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005716269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences598761
Sequences flagged as poor quality0
Sequence length10-85
%GC45

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGACCAGATTAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTA30360.5070470521627161TruSeq Adapter, Index 3 (100% over 36bp)
GACGACCAGATTACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTT21580.36041091520656826TruSeq Adapter, Index 1 (97% over 35bp)
GACGACCAGATTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAG15410.25736479162804526TruSeq Adapter, Index 3 (100% over 37bp)
GACGACCAGATTACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACT12150.20291902779239127Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GACGACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATC8230.13745050195320002TruSeq Adapter, Index 3 (100% over 42bp)
GACGACCAGATTACCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC6080.1015430196689497Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)