FastQCFastQC Report
Sat 18 Jun 2022
EGAF00005716305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005716305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences781478
Sequences flagged as poor quality0
Sequence length10-85
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAAGATAGTTACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACT71230.9114779942621545Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GATAAGATAGTTACCGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC31400.40180273788897447Illumina Multiplexing PCR Primer 2.01 (100% over 34bp)
GATAAGATAGTTAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTA24650.3154279455083829TruSeq Adapter, Index 3 (100% over 36bp)
GATAAGATAGTTACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTT18800.2405697921118701TruSeq Adapter, Index 1 (97% over 35bp)
GATAAGATAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCA10220.13077783379698468TruSeq Adapter, Index 3 (100% over 40bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)