FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7877959
Sequences flagged as poor quality0
Sequence length74
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGCG850.004485944819.99986616
ACGAGAC32250.013.705420568
CACGAGA44800.012.82588968
CCACGAG56100.011.93931467
TCTAGAC13800.011.8264583
GTATTAG8100.011.7534551
GTATTAC14800.011.7165831
CGTATGT8000.011.47499668
ATCTCCG246100.011.30109368
GTATAAG13350.011.2063441
CTAGACT13000.010.984964
TCTCCGA207100.010.81892568
TACGCTT4452.0861626E-710.69662630
CCCACGA65750.010.65246768
CCTATCG3208.912705E-510.62499627
TATACTG21500.010.595685
CGTTTCG5251.7329512E-810.36183514
TAGACTG20400.010.16698555
TGCGATC4058.48671E-610.07400712
CTATACT16600.010.036464
Produced by FastQC (version 0.11.5)