FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7756734
Sequences flagged as poor quality0
Sequence length74
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACGCGA1400.00455481714.57139653
CACGAGA49350.014.05486168
ACGAGAC36750.013.78518168
CCACGAG57950.012.32101867
TAATACG2050.00415989811.609734
ATTATAC15900.011.1194723
TCTCCGA209900.010.9824968
ATCTCCG249200.010.81953668
CCCACGA69950.010.69346668
GTCTAGA12950.010.5019061
GTATTAG9550.010.3245831
TACACCG12750.010.133315
TACGTAC2700.00278172110.0740513
CTAATAC12900.010.0154813
TAATACT22450.09.99552254
ATATCGG3502.2040706E-49.71426456
GTATTAC17200.09.6860251
TATACCG3200.00104969619.5624785
ATAATAC19300.09.5129323
TAATACA26250.09.4552164
Produced by FastQC (version 0.11.5)