FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10702080
Sequences flagged as poor quality0
Sequence length74
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCGA1351.7649808E-417.62968818
TACGCGA1402.3303868E-417.00013561
TACACCG7250.015.4759875
AACCGCG3353.9890438E-914.208877
GTATAGG20250.013.6001091
CTAATAC28800.013.3403853
TATACTG51350.013.1101355
ACCCGCG1850.001927581412.86478915
TACACTG52600.012.6693045
CTACACT36700.012.5995564
CCTATAC19450.012.0617933
GTATAGA34600.011.7920031
GTATTAG22850.011.606221
CTAAGAC24950.011.1744393
CTAGGAC23450.011.16426853
TAGACAG41850.011.0490735
GCTATAC19800.010.9899863
TAATACA74600.010.9840024
CTACGCG2803.070783E-410.92865960
ATAATAC54650.010.8875533
Produced by FastQC (version 0.11.5)