FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8813473
Sequences flagged as poor quality0
Sequence length74
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCG1351.7650201E-417.629589
TATACGC4000.016.1500452
CACGAGA72650.015.9118668
ACGAGAC48750.014.646111568
CCACGAG86950.013.76419367
TATACCG3903.353307E-812.2051625
TACACCG16100.012.03735
CCCACGA103950.011.64402766
GTATTAC16750.011.3671971
ATCTCCG328100.010.97406268
TCTCCGA278750.010.4286768
TCGTCCG14750.010.37285154
GTATTAT20350.010.3587511
GTCTAGA13600.010.250031
CTAAACG3005.8052543E-410.2000284
TTAACGT4704.4222725E-710.1276874
GTACTAG10250.09.9512481
GTATACG8250.09.8909371
GTATTAG10500.09.71431351
TATACGG3200.0010497319.56247258
Produced by FastQC (version 0.11.5)