FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14686896
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG64900.013.4116731
GTATTAG32300.013.2493911
GGTTTAC41100.012.1773761
GTGTTAG68000.011.7335711
GTATTAC45800.011.7195971
GTCTTAT51000.011.6624571
CTAGTAC23050.011.63742353
TAACGCA9501.7284037E-811.4469764
GTCTTGA81850.011.3432561
GTATAAT56650.011.2675421
TTATCGT10951.02591E-911.25532154
TTATACT60500.011.1442464
GTCTAGT25450.011.1153531
GTCTTAC47650.011.1123621
CGTACGA4600.006085081511.0323062
TATACTG61350.010.9898425
GTATAGG30550.010.921771
GTACGAT10003.653622E-810.8802191
TATACAG61500.010.8451575
TAATACT58100.010.731134
Produced by FastQC (version 0.11.5)