FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19457783
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT66200.014.7842114
GTATTAC66600.014.1574721
GTCTTAC69350.013.7006581
GTACTAG40550.013.0571561
GTATTAA101000.012.5670481
GTATAGA73000.012.419491
CTACACT74750.012.4142694
GTACTAT58450.012.4088661
GTCTAGA61400.012.2851811
TATACTG108800.012.1273215
GTGTTAG86250.011.9411411
TATACAG103850.011.9374625
TCTATAC70850.011.8698733
GTCTTAG52450.011.7541181
TAATACT107300.011.4860734
GTGCTAG66550.011.4434731
CTAGACT49950.011.3209144
GTATTAG50850.011.2681531
ATACCGA17450.011.2173616
TTATACT108650.011.2099054
Produced by FastQC (version 0.11.5)