FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005718612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522628766
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT16242133231.077763522875053No Hit
TCATGCGA13630398726.08046014061155No Hit
GGGACTAC11271313221.566576379379775No Hit
CATCAGTG10521750820.132360643922155No Hit
ATCGTACA8375950.16026576692489214No Hit
CATCAGTA7022180.13436267685273182No Hit
GGGACTAA6044190.11564977653755859No Hit
TCATGCAA5500330.10524353724532644No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)