FastQCFastQC Report
Mon 4 Jul 2022
EGAF00005718613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522628766
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGGGTAATTGACTTCGG7909900.15134834732767083No Hit
CAGACGCGATTGGGATGCTGTTAG7234650.13842808644788604No Hit
CAGACGCGCAGAGGGACGGTTTAG6968850.1333422584703269No Hit
CAGACGCGGCTATACCTGGCTAGA6836640.1308125469695252No Hit
CAGACGCGCCTCGCAACCCAACCC6681680.127847536046265No Hit
CAGACGCGCTTTAGGTGGCAATTT6563730.12559067596367246No Hit
CAGACGCGACATAACGACTCAATT6435500.12313711794425032No Hit
CAGACGCGGTTGTTGCTACCTAAC6376580.12200974027518417No Hit
CAGACGCGTAACCGTTGAGAAGGG6253890.11966218484039588No Hit
CAGACGCGGGTTATCCTAAATAGC6231760.1192387485230769No Hit
CAGACGCGTTCCGGCACCTTTAGC6191060.11845999307278848No Hit
CAGACGCGTGCTTCAACAAAGGAT6146580.11760891094923007No Hit
CAGACGCGCTGTTACACCCACATT6133080.1173506014018371No Hit
CAGACGCGCAGCAAGTGCGTAATC6031340.11540390411652159No Hit
CAGACGCGGCTATTTACTAAATGC5990990.11463184558042486No Hit
CAGACGCGAGAGGCGGATTCACCG5944160.11373579846157952No Hit
CAGACGCGACATAACGAACGAATT5922660.11332441658980555No Hit
CAGACGCGGTGCTGGACGCATGAT5903670.11296106115980611No Hit
CAGACGCGACTAAAGCTCAGCTCA5872440.11236350507350375No Hit
CAGACGCGTTTATCCTGCTCCAAA5828920.11153079162887103No Hit
CAGACGCGGGTGTTAACTATCCTG5761620.11024307070001578No Hit
CAGACGCGTCCATAGTGTCCGTAA5755600.11012788377591906No Hit
CAGACGCGCCTCGCAACGGATAAA5724600.10953472851894264No Hit
CAGACGCGACACCAAACGGTTAGT5656950.10824031067589572No Hit
CAGACGCGTTCACTTTGAGTCTTA5647030.10805050099366326No Hit
CAGACGCGTTGGCCACTTCAGGTC5630530.10773478932462742No Hit
CAGACGCGGTGACCTTGATGAGGT5564260.1064667764575362No Hit
CAGACGCGTCAATCCACCTCTAAC5486550.10497987016658017No Hit
CAGACGCGTATTCGTGAGGCTAGT5382920.1029970095446296No Hit
CAGACGCGTGCTAGCCTCGATAAG5376320.10287072487701529No Hit
CAGACGCGGAGGAACACGCTTGGG5375450.10285407826173885No Hit
CAGACGCGGCTACTCACAAGGTTC5373570.10281810626550932No Hit
CAGACGCGTATTCCTTGCGGATAG5343300.10223891885813266No Hit
CAGACGCGATATGCGACATGCTCC5313200.1016629842376491No Hit
CAGACGCGCAATTTGCTGTTGTTG5297920.10137061609808136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)