FastQCFastQC Report
Thu 12 May 2022
EGAF00005718614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504173311
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACACTC16399374032.5272552953522No Hit
ATTGGGAA14577408228.91348645783434No Hit
CAGTCTGG13558269426.892080767044014No Hit
GGCATACT499452579.90636670174713No Hit
ATTGGAAA23917200.4743844919629234No Hit
TCACACTA14662380.2908202334415119No Hit
CAGTCTGA13293950.2636781779192592No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)