FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005718625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164045048
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGACT4825388129.415018367393813No Hit
CTTTCGAC4421723726.95432598489654No Hit
TGCATCTG4313556426.294950396795887No Hit
GAACATGA2387521914.55406261333777No Hit
TGCATATG2769930.1688517900278221No Hit
TGAATCTG2507670.15286471798892703No Hit
TGCATCTA2151600.1311590947871831No Hit
CTTTCGAA2100080.12801849404195365No Hit
ACGGGANT2035980.1241110307700358No Hit
CTTTCGNC1878880.11453439301624027No Hit
TGCATCNG1830080.1115596003848894No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)