FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005718640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456284017
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCGAC11710419725.664759806828823No Hit
TGCATCTG11708773425.661151747070726No Hit
ACGGGACT11294425624.75305989076536No Hit
GAACATGA10398748222.790077698469986No Hit
TGCATCTA9536490.20900337607047936No Hit
CTTTCGAA5222640.11446028800960609No Hit
ACGGGACA4975350.10904063729236432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)