FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005718641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456284017
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGACTTGTCGACTCAATT19713250.4320390209942418No Hit
CAGACGCGGTGGTGACTTAAGCCC19173500.42020976597126786No Hit
CAGACGCGACGGTTTCTTGAGGTA18084450.396341956461736No Hit
CAGACGCGTACGGGCGAGCAATTA16700970.36602136778330324No Hit
CAGACGCGCAAACAATGATTATGC15166540.33239253260979335No Hit
CAGACGCGACCGGACACTACGGGT11992870.2628378280451581No Hit
CAGACGCGAGCAATACTACTCCTC11925920.26137054018265116No Hit
CAGACGCGACACCAAACAAGAACA10848770.2377635331460668No Hit
CAGACGCGGTTGCAGGAATAATCG10110240.2215777810161604No Hit
CAGACGCGGTAAACTGACTTAGAG10095220.22124860007971744No Hit
CAGACGCGACATAACGAAACCGCA9282980.2034474067497306No Hit
CAGACGCGGAGCGGTTGCCGCACA8626850.18906754737367887No Hit
CAGACGCGGGAGCAAACAATTTCC7772060.1703338208315984No Hit
CAGACGCGTTTGCGGCTCAAAGGT7753660.16993056322636874No Hit
CAGACGCGGCTACAAACCAGGAAA7629500.16720945103803625No Hit
CAGACGCGTACAACAACCACAATA7613140.16685090242816897No Hit
CAGACGCGTGCTATGTGACCAGGG7489280.1641363650920957No Hit
CAGACGCGACTCAATTGACCGCTA6958490.1525034789899292No Hit
CAGACGCGGCTTATTACCGTAAAT6799290.14901442405772455No Hit
CAGACGCGAGGCTAATGGATTACT6396910.14019579388422893No Hit
CAGACGCGTTCACTGACTTGGATA6332860.13879206292689408No Hit
CAGACGCGGCTGCAAGAGCAAGGG6269950.1374133164081441No Hit
CAGACGCGCCTTCAGGATCACAGA6174360.1353183493166275No Hit
CAGACGCGCGCTAAGACTAGTGAT6094110.13355957633729695No Hit
CAGACGCGCTCTAGCGAGCAATCG5702740.12498224324171318No Hit
CAGACGCGAACTTGTTGAATCGCC5624270.12326248105245377No Hit
CAGACGCGCCAATATCTAGGTTAA5604620.12283182822947752No Hit
CAGACGCGAATTAGGCTACTCACA5484680.1202032022962575No Hit
CAGACGCGTTGCAAGGAACTGGCA5267570.11544498171628921No Hit
CAGACGCGTCCTCAAACATCCAGA5228660.11459222337827361No Hit
CAGACGCGGTTCACTGACTGATGA5180940.11354638354558012No Hit
CAGACGCGGATTTAGGAGCAATTA4652710.10196960284935862No Hit
CAGACGCGTGGGTAACTCACAAAG4652130.1019568914683242No Hit
CAGACGCGCGTAAAGCTCCCTTTA4599300.10079905998548269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)