FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005718663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156553361
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCCTTT5031658632.14021447933015No Hit
TCTTAGGC4183033026.719534945021078No Hit
GTGAGAAG3725135023.79466640770491No Hit
CAAGTCCA2304898814.722767912980162No Hit
AGCCCTTA3643670.23274300703132142No Hit
AGCCCTNT2130240.13607117639588714No Hit
TCTTAGNC1760520.11245494754980061No Hit
GTGAGANG1566660.10007194926974451No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)