FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005718680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558552448
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGCC16077390928.784030859712566No Hit
TGTAGCGG15514152827.77564193935822No Hit
AAAGCATA12165020821.779549697721492No Hit
GCCTTTAT11255782720.15170238766906No Hit
CTGCAGCA14742340.26393832938675077No Hit
TGTAGCGA9201270.16473421668720356No Hit
GCCTGTAT7665160.13723259162942564No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)