FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005718681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558552448
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTTGTTGCTTAACGTT8823850.15797710728142758No Hit
CAGACGCGTACGGGCGATTAGCTT8766990.1569591187254093No Hit
CAGACGCGGCAAGTGCTAACTTCG8215790.1470907527022422No Hit
CAGACGCGCAGTAAGCTATGTTGC7776090.1392186181950097No Hit
CAGACGCGAATAGCTGAGAACGAA7492190.13413583678358526No Hit
CAGACGCGGCTCAAGGAACCTGGA7146780.12795181590538834No Hit
CAGACGCGCGGCACTTGCAATCGT6943810.12431795840952074No Hit
CAGACGCGGGTTTATTGGGTTTGC6841150.12247999314112755No Hit
CAGACGCGACGGCTCCTCAACCGT6716100.12024117026159735No Hit
CAGACGCGTGCGTGAACCTCCTCT6628180.11866710142858419No Hit
CAGACGCGGAGCTGGTGTGGCTAT6568700.11760220590779685No Hit
CAGACGCGCCGTTAGCTATGGCTT6511570.11657938342792833No Hit
CAGACGCGACAGCCAGAGTGAACC6479660.11600808524251602No Hit
CAGACGCGGGTGATTACACGGACC6374360.11412285494092043No Hit
CAGACGCGCTTTAGGTGCTTAACG6043960.1082075644219538No Hit
CAGACGCGAGGCCTTTGCTTCACC6026030.10788655607145418No Hit
CAGACGCGTTAAGGATGTTAGACC5983330.10712207996624876No Hit
CAGACGCGTTACAACCTGCTATAC5975090.10697455577170793No Hit
CAGACGCGGCACGCAACGGATCGC5887790.10541158706012868No Hit
CAGACGCGCTATATCGATGCCCAT5825320.1042931603085553No Hit
CAGACGCGCAAACCGACCCAACCC5703960.10212040105497845No Hit
CAGACGCGTGGATTAACACAAAGA5700370.10205612777119187No Hit
CAGACGCGCAGGAGGACTATGTGA5693390.1019311618879522No Hit
CAGACGCGCAGTAAGCTAGTAGGC5604250.1003352508805046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)