FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005718699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446389802
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGACTG11674983726.154234813814135No Hit
CCTCTAAC11577508025.935870282269573No Hit
TTATCTGA11096121824.857471542327037No Hit
GACAGGCT9693138121.714515108927152No Hit
TTATCTAA7116640.15942658116549No Hit
AGGGACTA6569840.14717719738588472No Hit
CCTCTAAA5834460.13070325473071628No Hit
GACAGGCA4599730.10304290060819982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)