FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005718700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446389802
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCTAGTTTGATTAGCAG14719630.32974834850729856No Hit
CAGACGCGGCTGACAGATTCACCG13706200.30704554491592084No Hit
CAGACGCGCGATTGAGAATGACCG13379620.29972951756635335No Hit
CAGACGCGGATACTCCTCCTGAGT11024920.246979656582746No Hit
CAGACGCGGCGTCTATGGACACAA10897180.24411803206920035No Hit
CAGACGCGTCCCTCTACGTCAATG8596920.19258773299664225No Hit
CAGACGCGACCCGGAACTCATAAG7181130.16087128262845038No Hit
CAGACGCGGAGGTGAACTGGCTAG6458340.14467938046667114No Hit
CAGACGCGAAGCTAACTGCAAGGT6442780.14433080619525443No Hit
CAGACGCGGTTGCTGTGGGATAAC5736760.1285145846589031No Hit
CAGACGCGTGTTGGTTGATGGCGG4485760.10048975088369066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)