FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005718717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419241929
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA11301542726.957090687367767No Hit
AAGTTGAT10241232424.42797747932316No Hit
GGTCGAGC10124356024.149197157233765No Hit
TTAGATTG9317298822.22415783226682No Hit
GTAGATTG38116000.9091647891926383No Hit
CCCACCAA12488480.2978824191031713No Hit
TTAGATTA7701350.18369703665780052No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)