FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005718718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419241929
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCACATAAACGAGGAAC33310710.794546243965975No Hit
CAGACGCGGTCCTCCTGATCAATC30799680.7346517098961254No Hit
CAGACGCGTAGTCTCACTATAACG30608060.7300810792710574No Hit
CAGACGCGAAGTTTGGATATTTGC30269350.7220019732329779No Hit
CAGACGCGGGCTTCGCTAAATAGC29827060.7114522173663598No Hit
CAGACGCGAGGACTTACACGCGGT29683550.7080291341756516No Hit
CAGACGCGCGAATATACTCAATAG27481840.6555126789334089No Hit
CAGACGCGGAATTTGGACTTAGAG24813310.5918613641337387No Hit
CAGACGCGCAGCTAAGAGGGTGGA24493130.5842242463300945No Hit
CAGACGCGGCATATTTGATGGACA24231330.5779796419169706No Hit
CAGACGCGCATCCAGCTAACACCT23983150.5720599095898159No Hit
CAGACGCGCAGCGATACCTCCCTT23611200.5631879439234238No Hit
CAGACGCGTATTGCTGACCTGGTT23031730.5493660916725722No Hit
CAGACGCGCTCCATAACTAACGAT22357120.5332749053351484No Hit
CAGACGCGTACAAGCGAGTAACTA22335940.5327697077741478No Hit
CAGACGCGCATAACGGATTAGTGG21665650.5167815645653133No Hit
CAGACGCGCACAGGCGACTCAATT21441340.511431193228767No Hit
CAGACGCGTGCGTGAACGATTACG20640380.4923262339058649No Hit
CAGACGCGAGGGATTTGGACACAA20588030.49107755154900073No Hit
CAGACGCGTTGGACCCTATTGACC19315080.46071441485042874No Hit
CAGACGCGCTGTTACACGCCACAG16924570.4036945932476138No Hit
CAGACGCGTAAGCACGAAGTTATG16474940.39296975947269813No Hit
CAGACGCGCCAGGGACTGGATCCC15996700.38156250349663856No Hit
CAGACGCGTGGAGCGCTCCTCACC15949420.3804347537004105No Hit
CAGACGCGCCTTCAGGATCACACC15491450.3695109894411348No Hit
CAGACGCGCGCAAGCGAACCGGTA14568100.3474867133339614No Hit
CAGACGCGAAATGCTGATATAGGC13499520.3219983276052525No Hit
CAGACGCGGTTTGGCTGCTTATCT13095280.312356162257807No Hit
CAGACGCGCAGGAATCTTCACTTC12567910.299777029219804No Hit
CAGACGCGTTCTTAGGAATATAGC12059760.2876563426937195No Hit
CAGACGCGAACAGCTACTATCCTG11838520.2823791987656845No Hit
CAGACGCGTTCGTAACTGATTTGC11689260.27881896326261774No Hit
CAGACGCGTTTGGAAACTCATGCT9925010.2367370559446119No Hit
CAGACGCGCTAGATTCTCTATTGA9745830.23246315136575949No Hit
CAGACGCGCTTCCTCACAACAAAG9548020.2277448732948655No Hit
CAGACGCGCTTGACCGATTAAGGC9366270.22340966759553288No Hit
CAGACGCGCATTTGTGAGGACTTG8666350.20671477255797094No Hit
CAGACGCGAGGACTTACCAGTTTC8585670.2047903467212603No Hit
CAGACGCGGTGGGAGGATTACTAC8568720.2043860455570034No Hit
CAGACGCGTTAAGGATGGTGCTGT8326420.19860656637709534No Hit
CAGACGCGTTACGTCACTAGCTTC8284540.19760762049160402No Hit
CAGACGCGACACTTGCTGGTTAAA8121240.1937124948206218No Hit
CAGACGCGCCGGTACTGGCGATAA7667920.18289964504003606No Hit
CAGACGCGTCCTCTACTAATAAGC7665630.18284502264085326No Hit
CAGACGCGCGCAACCTGTCTTGGA7551850.18013107653647878No Hit
CAGACGCGCTCTCACTGCTTCATT7485840.17855656799060288No Hit
CAGACGCGACGTAAACTAGCACGA6888460.16430751610247457No Hit
CAGACGCGCTGATTTGAGGACTTG6807180.16236877872012653No Hit
CAGACGCGTTTCGTCCTAGTCTCA6550970.15625751020719114No Hit
CAGACGCGTAATCCGTGCACGGTC6402290.15271110919824052No Hit
CAGACGCGATCGTTATGGGATAAC6199340.14787022888638604No Hit
CAGACGCGCTTCGCTTGAGGGACC5982900.14270757732345038No Hit
CAGACGCGTCGTGACCTGCAGGTA5694690.1358330263765197No Hit
CAGACGCGCATCGCTGATGTTGCC5121090.12215118874715415No Hit
CAGACGCGAGTTAACGATTAGCAG4985500.11891701795885976No Hit
CAGACGCGGAAACCTACAAGGTTC4970940.11856972445139187No Hit
CAGACGCGCCTTTGGGAGCATAGC4867950.11611314764273016No Hit
CAGACGCGGTAATTGGAGCTAAGC4771540.11381352078455875No Hit
CAGACGCGACGATTAGACTAGTAG4707840.11229411168938687No Hit
CAGACGCGGGTTCACTGCGACTTA4578400.10920663424387593No Hit
CAGACGCGCAAGGGCCTCCACAAC4347760.10370527610085488No Hit
CAGACGCGCAACAGCACAAAGGTA4291800.10237048594440562No Hit
CAGACGCGAAGCTATGAGTAACTA4231050.1009214419486177No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)