FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005718721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences349213424
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGCTGT10097711228.915587162537026No Hit
GCCAACAA8408583324.078637080114078No Hit
AGGCTACC8089940023.166177025313893No Hit
TATTGGTG7864389722.5202960697181No Hit
TATTGGTA5727700.16401717707163513No Hit
GATTGGTG5126430.14679933953512622No Hit
AGGCTACA4782060.13693803477612015No Hit
CTAGCTGA4317210.12362669082274455No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)