FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005718724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences310704074
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGCGAGGTTGTGGGAAC6772170.21796205993745676No Hit
CAGACGCGCAACTCGCTAGTCCCG4730020.15223553200013723No Hit
CAGACGCGACAGCACGATTGTTTG4663970.15010971500811413No Hit
CAGACGCGACACTTGCTAATCGGG4478350.14413554165369585No Hit
CAGACGCGGGGTGAAACGCTTACC4120870.1326300600744617No Hit
CAGACGCGCAGGAACTGCAGCAAG3919160.12613803062009415No Hit
CAGACGCGTTTGTACGACTAAGGT3721580.11977892507453894No Hit
CAGACGCGGACCAAGCTCCCTCAC3637570.11707506609649411No Hit
CAGACGCGCGACAAACTGGTCTTA3579260.11519836073987236No Hit
CAGACGCGGGATTGATGTTCGGTA3564630.11472749469001169No Hit
CAGACGCGTCAAACAACGTGCTTC3538900.1138993755196142No Hit
CAGACGCGGTGATTAGAGTAACTA3493250.11243013183019931No Hit
CAGACGCGAATGAGCTGAGCTAGA3465200.11152734353911305No Hit
CAGACGCGATGGAGGACGCTAACA3342600.10758146673030106No Hit
CAGACGCGGAATATCGAGGCTTGA3288940.105854421464715No Hit
CAGACGCGTGTGTTACTAGCGAGT3275610.10542539587041269No Hit
CAGACGCGCGAATATACAAGTAAG3260830.1049497020756799No Hit
CAGACGCGCGCTAGCTGCGCCACA3236150.10415537711938724No Hit
CAGACGCGGTTATTGTGCACTTGA3174010.1021554033436974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)