FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005718752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124141101
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCAGATCATTTCATATTGCTTCCGTGGAGTGTGGCGAGTCAGCTAAAT3396070.2735653198371424No Hit
CGGGGAAACGCCATATCGGGGGCACCGATTATTAGGGGAACTAGTCAGTT2208640.17791367904816635No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA1934060.1557952994149778No Hit
CGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAGATT1836890.1479679159604038No Hit
GGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAA1646170.13260475271602434No Hit
GGGAAATAGAATGATCAGTACTGCGGCGGGTAGGCCTAGGATTGTGGGGG1565810.1261314735721572No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG1431950.11534858225560607No Hit
GAAGAAAGTTAGATTTACGCCGACGAATATGATAGTGAAATGGATTTTGG1423410.1146606553779477No Hit
GGGGAAACGCCATATCGGGGGCACCGATTATTAGGGGAACTAGTCAGTTG1315700.10598423804860568No Hit
GGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAAT1268350.1021700298920339No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)