FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005718765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005718765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384242600
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGATGGTTAGAGTAGCTG5474780.14248237962162447No Hit
CAGACGCGCGGGAACCTCATAGAG5469960.14235693803862454No Hit
CAGACGCGGTTTGTCGAGAGGCTT5234100.13621862854352954No Hit
CAGACGCGCCGTTGCACCTAGCTT5172110.13460532486507223No Hit
CAGACGCGAGGTTAACTTGCTGCA4920780.12806440514404183No Hit
CAGACGCGCACCAGGGAGTAATCA4914770.12790799354366225No Hit
CAGACGCGGCATAGCGACTAGTTT4738220.12331324012485861No Hit
CAGACGCGGCCAGCAACGTGCTTC4662090.12133193976930201No Hit
CAGACGCGGGTATAGTGTAAACAG4552990.11849258775575638No Hit
CAGACGCGCTGACCGTGTGACATC4055930.10555648957195271No Hit
CAGACGCGCAGAGGGACAAGCGTT3968410.10327876190719093No Hit
CAGACGCGCGAGGTTACGCTTAAG3947840.10274342303534277No Hit
CAGACGCGCGTTTGTACTAGCCTT3938270.10249436163507117No Hit
CAGACGCGTGGTGTGACTTATGAG3902170.10155485102380632No Hit
CAGACGCGGATAGCCGACATGCTC3899390.10148250089917152No Hit
CAGACGCGGTAGTTAGAGTCTTAC3898360.10145569491774208No Hit
CAGACGCGGCTTAAAGATAGATGC3862940.10053388145926559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)