EGAF00005720002 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005720002
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368169250
Sequences flagged as poor quality	0
Sequence length	151
%GC	41

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGTC	254550	0.0	15.530495	9
AGAGCGT	287245	0.0	13.803213	8
GATCGGA	296015	0.0	13.457281	1
ATCGGAA	306850	0.0	13.072794	2
TCGGAAG	316320	0.0	12.669228	3
CGGAAGA	331170	0.0	12.123808	4
AAGAGCG	337595	0.0	11.8649435	7
CGTATGC	46915	0.0	7.9974194	1
CGCCGTA	109480	0.0	7.6268206	55-59
GAAGAGC	585770	0.0	7.239142	6
TCGCCGT	118895	0.0	7.1131115	55-59
GCCGTAT	127310	0.0	6.6839447	55-59
CGTATCA	138645	0.0	6.3247495	60-64
CCGTATC	134325	0.0	6.238881	60-64
GTCGCCG	138135	0.0	6.19899	55-59
TGGTCGC	150950	0.0	5.7034183	50-54
TATGCCG	34420	0.0	5.688776	3
GTGGTCG	162475	0.0	5.3791647	50-54
GGTCGCC	157720	0.0	5.3667154	55-59