FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005722861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005722861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104964811
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA2955190.2815410204473192No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1684250.16045853690909803No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1610510.153433325383685No Hit
CCACCTACTAAGAACGGCCATGCACCAC1438380.13703449625608338No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1319460.12570498507352146No Hit
CCTTTAAGTTTCAGCTTTGCAACCATAC1317070.1254772897175988No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1084230.10329461746946794No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1053310.10034886834598311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)