FastQCFastQC Report
Tue 26 Jul 2022
EGAF00005722889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005722889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1814097
Sequences flagged as poor quality0
Sequence length13-59228
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATATGGGAGAGTTTCCCGGGCACTCACCGTGTGTAGTTGGCATCTCC97280.5362447542771969No Hit
CTTATATGGGGAGAGTTTCCCGGGCACTCACCGTGTGTAGTTGGCATCTC81260.44793635621468975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)