FastQCFastQC Report
Thu 28 Jul 2022
EGAF00005722938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005722938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93858036
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3889420.4143939257369503No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1924290.2050213366919376No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1802080.19200060823774323No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA1427630.15210524967728922No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1362580.14517456981520474No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1229760.1310234107178633No Hit
CCACCTACTAAGAACGGCCATGCACCAC1228470.13088596910338077No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1218240.1297960251373681No Hit
AAACGGGTTACCCGCGCCTGCCGGCGTA1059770.11291201533345531No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1055710.1124794471514405No Hit
CCTACCAACTAAGAACGGCCATGCACCA1055590.11246666188497702No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1052010.11208523476881618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)