FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6381699
Sequences flagged as poor quality0
Sequence length35-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN114740.1797953805091716No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG24050.07.9326612
TAGGGGG12152.9990388E-65.7206850
GGGCGGG18305.2656105E-85.131750658
GGGGGGC23301.9645086E-105.073228455
Produced by FastQC (version 0.11.5)