FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9237022
Sequences flagged as poor quality0
Sequence length35-76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN292760.3169419754548598No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAACGC950.007421296618.3309559
AGGGGGG53900.017.236172
GAGGGGG60950.014.7819431
TGGGGGG107300.010.0797462
ATCCGGG4800.00420368569.5835270
GTGGGGG114800.08.8441811
Produced by FastQC (version 0.11.5)