FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6444933
Sequences flagged as poor quality0
Sequence length35-76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN79360.12313549264204918No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATAT2503.9578005E-415.85860970
GGGGGCG13754.456524E-106.573409656
TAGGGGG10952.0066966E-55.71432450
GGGGCGG15504.2273314E-85.608675557
GGGCGGG15552.641773E-75.36843858
Produced by FastQC (version 0.11.5)