EGAF00005724389 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005724389
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5829075
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	18647	0.31989638150135313	TruSeq Adapter, Index 27 (97% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	2600	61.466164	1
TATGCCG	2660	61.39792	48
CGTATGC	2665	61.278515	46
TTACTCG	2725	60.165688	35
TGCCGTC	2705	59.996788	50
TCTCGTA	2410	59.97276	43
GCCGTCT	2710	59.88918	51
CTCGTAT	2545	59.7954	44
TACTCGA	2690	59.39948	36
TCGTATG	2780	58.741596	45
ATCGGAA	2870	57.97714	2
ATGCCGT	2810	57.875107	49
ACACGTC	2880	57.40265	13
CGTCTGA	2880	57.40265	16
TCGGAAG	2920	56.86444	3
CGTCTTC	2880	56.604153	53
ATCTCGT	2535	56.466328	42
CCGTCTT	2940	55.565285	52
CGGAAGA	3075	54.563404	4
ACTCGAT	2900	53.422615	37