FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5299540
Sequences flagged as poor quality0
Sequence length35-76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN70500.13303041396045695No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCCCG2350.00983934810.34041828
CGGGGGA4200.00991741857.45831961
GGGGGCG10756.2282197E-97.114344656
GGGGCGG12755.6024874E-106.819107557
GGGGGGC15951.3351382E-85.6665855
GGGCGGG14201.441238E-65.38953758
Produced by FastQC (version 0.11.5)