FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5235926
Sequences flagged as poor quality0
Sequence length35-76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN89190.1703423615994573No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCGCT1550.007729775318.20150870
CCTATGC8350.0079288946.75744670
CCGGGGG7650.0097726665.45367351
TTCACGC9900.0010449925.25670122
Produced by FastQC (version 0.11.5)