EGAF00005724487 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005724487
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11073465
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	82815	0.7478688919863837	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT	11348	0.1024792149521401	TruSeq Adapter, Index 27 (97% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	2855	59.856506	1
TATGCCG	2960	59.1745	48
AGGGGGG	28610	59.087532	1
TCTCGTA	2995	56.608204	43
CTCGTAT	3035	56.438572	44
TGCCGTC	3160	55.549553	50
CGTATGC	3195	55.14092	46
TTACTCG	3210	54.633648	35
ATCGGAA	3260	54.54361	2
ATGCCGT	3225	54.425274	49
GCCGTCT	3200	53.994495	51
CGTCTGA	3275	53.96396	16
TCGTATG	3265	53.74247	45
TACTCGA	3270	53.63338	36
TCGGAAG	3360	53.01862	3
ACACGTC	3395	52.467056	13
ATCTCGT	3235	52.404736	42
CGTCTTC	3355	51.615257	53
CGGAAGA	3710	48.016647	4
CCGTCTT	3625	47.95724	52