FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005724500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10807963
Sequences flagged as poor quality0
Sequence length35-76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG187110.17312235432338174No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG38450.08.6519242
CCGGACT4450.00196896527.79583712
GAGGGGG48750.06.75068861
GCGGTGC6150.0060777736.24236661
Produced by FastQC (version 0.11.5)