FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005724966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005724966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6548368
Sequences flagged as poor quality0
Sequence length35-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG132490.20232522057404226No Hit
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA106010.16188766422412423No Hit
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGA105200.160650714804055No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG95410.1457004248997613No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC74900.11437964390516844No Hit
GCTCTTTTACTTTTGTGACAATTTGTGCTACAAGTGAAGATCCACAGCAG70840.10817962582432752No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC68530.10465202933005599No Hit
GCACGTAGAGCTCCGGGTGTCGGGAAAGCTGGGGGAGTACTGGTCCAGGG67980.10381212540284845No Hit
CCTCCCCTGTTCCCATTACTCTAACTTTCGCATGCACACACACGTACCTT65980.10075792930391206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)