FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005725058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8321856
Sequences flagged as poor quality0
Sequence length35-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGA142390.17110365764560215No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG123120.14794776549846572No Hit
GTAATATATTTGGTCTGCGGCCTGTCGATTATACACATCTCCGAGCCCAC118100.14191545732105915No Hit
GGAAAATTGCATATATTTCAAGACATTCTATCCAAGCTGTGTTCTATCTT117220.14085800090748987No Hit
GGGAATTGGAATCAGGTAGCGCTTCGATTCTCCGGAAAAAGGGGAGGCTT100110.12029768359365987No Hit
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA93500.11235474394173607No Hit
GCGTGGGTCCCAGTCTGCAGTTAAGGGGGCAGGAGTGGCGCTGCTCACCT90610.10888196094717333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)