EGAF00005725064 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725064
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5257075
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGA	14024	0.2667643128545817	No Hit
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	11227	0.21355982176400373	No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG	10926	0.20783420438171418	No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG	7635	0.14523285286970417	No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT	7334	0.13950723548741456	No Hit
CTTTCGTGTTCAAACCACGGAGTTCACAACACAGCAGCACACACAGCCGG	6767	0.12872177018589234	No Hit
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC	6183	0.11761293114517103	No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA	5865	0.11156394002368238	No Hit
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC	5563	0.10581930065673402	No Hit
GCTCTTTTACTTTTGTGACAATTTGTGCTACAAGTGAAGATCCACAGCAG	5299	0.1007974967068189	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCCGTT	640	100.82184	7
GTTCGCG	335	85.83595	3
CTTTCGT	2480	82.00949	1
TCGTGTT	2425	81.84818	4
GCTAGCC	2330	81.269135	1
GTTAGCG	200	80.6521	1
CGTCGAC	515	78.98465	8
CGATCGT	210	75.34802	145
TTCGTGT	2760	72.92947	3
CGCCGTA	225	71.695526	7
AGTCGAA	1410	69.63884	5
TTTCGTG	3170	68.80614	2
TCGCGCT	420	68.46635	5
GCTTAGA	3695	68.14321	6
ACGCGTA	215	67.93453	145
CTAGTCG	1480	66.8171	3
CGGCGAT	305	66.6844	2
CGTATCG	440	66.390564	145
CGCGTTC	375	65.46051	5
CCGCGTT	355	65.195854	4