Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005725092 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6744000 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG | 14344 | 0.21269276393831557 | No Hit |
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGA | 11315 | 0.16777876631079477 | No Hit |
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA | 8299 | 0.12305753262158957 | No Hit |
GAATGTAAATGCAATTTTATTTACCACTTTGATGCTCCAAATGGCACTGC | 8224 | 0.12194543297746145 | No Hit |
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG | 8134 | 0.1206109134045077 | No Hit |
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA | 7885 | 0.11691874258600238 | No Hit |
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC | 7179 | 0.10645017793594305 | No Hit |
GGAGTCTTCCTGGGTCAGTTGCCTTCCCACAGGCCTCACACACAGTGCAC | 7005 | 0.10387010676156584 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCCGTT | 1000 | 0.0 | 109.13897 | 7 |
ACGCGTA | 305 | 0.0 | 91.95365 | 145 |
GTTCGCG | 420 | 0.0 | 87.71578 | 3 |
GTTAGCG | 230 | 0.0 | 81.59701 | 1 |
CGTCGAC | 755 | 0.0 | 75.49666 | 8 |
CGAACGT | 240 | 0.0 | 69.50856 | 1 |
CTAGTCG | 1615 | 0.0 | 68.0042 | 3 |
TCGCGCT | 575 | 0.0 | 66.490395 | 5 |
TACCCGT | 1700 | 0.0 | 64.19843 | 6 |
CGATCGT | 180 | 1.2732926E-11 | 63.740604 | 145 |
GTACCCG | 1730 | 0.0 | 63.083763 | 5 |
TCGTGTT | 2015 | 0.0 | 62.43928 | 4 |
GCTAGCC | 2020 | 0.0 | 62.282425 | 1 |
CGCACTA | 425 | 0.0 | 62.14883 | 1 |
TTACGCG | 305 | 0.0 | 61.537186 | 6 |
TTCGCGC | 600 | 0.0 | 61.40151 | 4 |
AGTCGAA | 1790 | 0.0 | 61.35757 | 5 |
TAGTCGA | 1820 | 0.0 | 60.344833 | 4 |
CGCCGTA | 330 | 0.0 | 56.87612 | 7 |
CGCGATA | 315 | 0.0 | 55.17084 | 7 |