EGAF00005725196 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725196
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11340815
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTAGCCCTGTCATTCTAGGAGTTTATTATCCTTCAGACACAGCTACTTA	20400	0.17988125192060714	No Hit
GAGTACCCATAATACAGTGAGCCCACCTTCCTGGTCCCCAGACATTTCAG	16737	0.14758198595074518	No Hit
GCAGTGCTTAGACTCAGTACCACCTGCCCAGAGCAAATCTGATGGACTGA	16510	0.14558036613770703	No Hit
CACCTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTA	15537	0.13700073583776826	No Hit
CTTTCGTGTTCAAACCACGGAGTTCACAACACAGCAGCACACACAGCCGG	13191	0.11631439186689846	No Hit
GCCACTTGATTTCTTTTCCTTTCTCTCTCTACCAATATTAAGCCTTAGTG	12492	0.11015081367608942	No Hit
CTGATTGATGTTTAGCTCTAGACTAAGTTGCTTTCAAGTGATAACTGTCT	12199	0.10756722510683757	No Hit
GGACAAAGCAGGAAGATGTGACTGAAATCCTGAAAGGAGCCGGCTCCTGC	11605	0.102329506300914	No Hit
TTGGAGGTGTCTTGAGTGCACTGTGTGTGAGGCCTGTGGGAAGGCAACTG	11343	0.10001926669291404	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCCGTT	1695	117.27101	7
GTTAGCG	500	101.48968	1
CGTCGAC	1090	79.70358	8
GCTAGCC	3945	78.94053	1
ACGCGTA	680	78.29927	145
CTAGTCG	2465	75.84147	3
GTACCCG	2745	72.666435	5
TACCCGT	2770	72.010605	6
TCGTGTT	4560	71.177475	4
CGATCGT	555	68.52445	145
CGAACGT	440	67.93363	1
TTACGCG	650	67.363014	6
AGTCGAA	2950	63.611565	5
CGCACTA	810	62.647953	1
TAGTCGA	3015	62.239628	4
GCGATTA	540	61.779137	6
CTTTCGT	5420	60.279217	1
GTTCGCG	465	59.783092	3
TATTGCG	1000	59.076294	7
GTCGAAA	3290	56.826477	6