FastQCFastQC Report
Fri 10 May 2024
EGAF00005725228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31662652
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length42
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25747648.131864633448897No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1225480.3870427530833488No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG671530.2120889936825254No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT598660.189074496981491No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT587970.18569827947450518No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT482480.15238142401969362No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC477850.15091913336886625No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT350550.11071403620896948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)