EGAF00005725237 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725237
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22076734
Sequences flagged as poor quality	0
Sequence length	16
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAA	489844	2.2188245779470823	No Hit
GGGGGGGGGGGGGGGG	236315	1.0704255439232995	No Hit
CAAAAAAAAAAAAAAA	221622	1.0038713153856906	No Hit
CCAAAAAAAAAAAAAA	114759	0.5198187376810356	No Hit
TAAAAAAAAAAAAAAA	50286	0.22777825741796773	No Hit
NNNNNNNNNNNNNNNN	42671	0.19328493064236765	No Hit
CTAAAAAAAAAAAAAA	39718	0.17990885789537528	No Hit
TCAAAAAAAAAAAAAA	36860	0.16696310242266815	No Hit
ACAAAAAAAAAAAAAA	31991	0.14490820970167054	No Hit
TCCAAAAAAAAAAAAA	27387	0.1240536756931528	No Hit
GCAAAAAAAAAAAAAA	25317	0.11467728876925364	No Hit
GAAAAAAAAAAAAAAA	23623	0.10700405232042022	No Hit
CCCAAAAAAAAAAAAA	23494	0.10641972675849608	No Hit

Can't analyse adapters as read length is too short

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	18345	9.636054	9
CCAACGT	9440	9.598729	9
ACAAGGC	11755	9.580172	9
ACCAGAC	10075	9.574753	10
CATCTCA	15325	9.567336	9
CAGATGA	14465	9.562558	10
ATCCACG	7880	9.544694	10
CGAACTG	10425	9.5408325	9
CACTCAC	10930	9.516356	9
ACGCTCT	11125	9.515868	9
CAAGAGA	8775	9.505533	9
AAACTGC	7785	9.500576	10
TCGACGA	11180	9.496172	10
CAAGAAG	9305	9.49106	10
ACACGCA	9830	9.482717	10
ACTCACT	10815	9.479114	10
CAACGTT	9550	9.477975	10
CACTATC	10150	9.474162	9
GCGTATA	10705	9.473464	9
ATCGACG	11225	9.462278	9