EGAF00005725243 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005725243
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8143151
Sequences flagged as poor quality	0
Sequence length	16
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAA	284652	3.495600167551848	No Hit
CAAAAAAAAAAAAAAA	103300	1.2685507121260553	No Hit
GGGGGGGGGGGGGGGG	74677	0.9170528705657062	No Hit
CCAAAAAAAAAAAAAA	47908	0.5883226284272514	No Hit
TAAAAAAAAAAAAAAA	32681	0.4013311309098898	No Hit
GAAAAAAAAAAAAAAA	24608	0.30219260333008685	No Hit
CTAAAAAAAAAAAAAA	19576	0.24039834211596964	No Hit
TCAAAAAAAAAAAAAA	18466	0.22676725508344375	No Hit
GCAAAAAAAAAAAAAA	16197	0.19890334834758683	No Hit
ACAAAAAAAAAAAAAA	13081	0.16063806258781152	No Hit
TCCAAAAAAAAAAAAA	11199	0.13752661592545687	No Hit
GTAAAAAAAAAAAAAA	9509	0.11677297891197155	No Hit
CCCAAAAAAAAAAAAA	9284	0.1140099207297028	No Hit
ATAAAAAAAAAAAAAA	8600	0.10561022385560577	No Hit

Can't analyse adapters as read length is too short

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACACTG	6595	9.774207	9
ACACTGA	6360	9.758298	10
GTCATTA	10600	9.746931	9
CTGCTAT	9490	9.7333	10
CCTGCTA	9515	9.728392	9
TTCCCTC	12270	9.716393	9
CAACGAC	3145	9.699931	10
CCTACAC	5950	9.699119	9
TCCCTCA	11675	9.693645	10
ACAAGGC	6785	9.684762	9
ACCGGAA	2290	9.674482	10
AACCATG	4245	9.660411	10
TCATTAG	10560	9.642137	10
CAAACGA	4005	9.627096	9
CAACCAT	4510	9.60251	9
AAACGAG	3845	9.585849	10
TCCAAAG	4400	9.581518	10
ACTGCTG	6215	9.575583	10
CACAACT	4430	9.573077	10
CGAGATT	3140	9.556108	10