FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005725250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14029441
Sequences flagged as poor quality0
Sequence length42
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10608077.561292000158809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1044010.7441565205627223No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT462160.3294215357547033No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT274560.1957027368374834No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT247910.17670696929407237No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT232200.16550908906491713No Hit
GGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGG217410.15496697266840495No Hit
TCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAACC164460.11722491295269712No Hit
ATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGAC158880.1132475627503619No Hit
TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT155160.11059599594880509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)