FastQCFastQC Report
Fri 10 May 2024
EGAF00005725257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005725257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38105251
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length42
%GC21

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4641391.2180447256468667No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2862060.7510933335670719No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1022130.26823862149602423No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA454040.1191541816638342No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA438380.11504451184431248No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)